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Danio rerio

In brief

The zebrafish, Danio rerio, is a small freshwater fish from South Asia, recognizable by dark horizontal stripes along its body. [2]

Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-F
    locator
    Environment; Distribution; Short description
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Introduction

It belongs to the family Danionidae within the ray-finned fishes.

[1]
Evidence for this statement

Editorial synthesis

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  • evidence id
    A10-N
    locator
    Lineage: Actinopterygii; Danionidae

A striped body built from living cells

Its body is slender and flattened from side to side, with small barbels around the mouth.

[2]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-F
    locator
    Short description: fusiform, laterally compressed body; rostral and maxillary barbels

The characteristic five body stripes continue onto the tail fin, and the anal fin is also striped.

[2]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-F
    locator
    Short description: horizontal stripes and fins

At the cellular level, dark melanophores, yellow or orange xanthophores and reflective iridophores together produce the adult pattern.

[5]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-P
    locator
    Abstract; Author Summary

These cells interact during development: experimentally removing iridophores can disrupt the arrangement of the other pigment cells.

[5]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-P
    locator
    Results: iridophore ablation; Abstract

The adult stripes are not simply the embryo’s markings enlarged, because a new pattern develops during the transition toward adulthood.

[5]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-P
    locator
    Introduction: distinct early-larval and adult pigment patterns

Spawning and the first stages of life

Zebrafish reproduce through eggs that are fertilized outside the female’s body.

[7]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-W
    locator
    Experimental accessibility

During courtship, males swim close to females and try to guide them toward a spawning site, where females release eggs onto the substrate.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Background: spawning and courtship paragraphs

Some males defend a spawning area, whereas others pursue females without holding such a territory.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Background: territorial and non-territorial courtship

After fertilization, yolk-poor cytoplasm gathers at one pole of the yolky egg and forms the disc in which early cell divisions occur.

[8]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-Z
    locator
    Zygote Period: 1-cell stage

Cleavage partitions that disc into cells without dividing the whole yolk into separate cells.

[9]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-C
    locator
    Cleavage Period: meroblastic divisions

Later, the embryo lengthens, repeated body segments form and early organ structures become visible.

[10]
Evidence for this statement

Editorial synthesis

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  • evidence id
    A10-S
    locator
    Segmentation Period: opening paragraph

Hatching occurs at variable times, commonly during the third day under the standard laboratory conditions used in the classic staging series.

[13]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-E
    locator
    Hatching Period: first paragraph

That series uses 28.5 °C as its reference temperature, and changing temperature changes the pace of development.

[11]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-T
    locator
    Temperature and Standard Developmental Time

The jaws, gills and paired pectoral fins continue taking shape around this period.

[13]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-E
    locator
    Hatching Period: organ rudiments, fins and jaws

Feeding and life on a floodplain

A field survey in Bangladesh found zebrafish especially abundant in shallow ponds, lakes and ditches in open settings, often with vegetation along their margins.

[3]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-H
    locator
    Abstract: surveyed habitats and highest abundance

The findings associate these fish with floodplain waters rather than making them specialists of the main river channel.

[3]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-H
    locator
    Abstract: floodplain rather than riverine species

A separate Bangladesh study found that zooplankton and insects were the main foods.

[4]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-D
    locator
    Abstract: diet

In that study, the principal breeding season began just before the monsoon, and growth was fastest early in life during the monsoon season.

[4]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-D
    locator
    Abstract: recruitment and seasonal growth

Those field observations differ from laboratory conditions, under which spawning can occur throughout the year.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Background: laboratory breeding throughout the year

Why this fish matters to research

Because the embryo is accessible and optically clear, researchers can watch tissues develop and follow cells in a living vertebrate.

[7]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-W
    locator
    Experimental accessibility; Optical transparency

Pigment-cell experiments show how zebrafish can connect an easily visible feature, such as a stripe, to the interactions that build it.

[5]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-P
    locator
    Abstract; Results: iridophore ablation

Behaviour also depends on circumstances: in an aquarium experiment, territorial males had greater reproductive success at low density, but not at high density.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Abstract: Results; Discussion: density-dependent reproductive success

Developmental stage is not simply elapsed time

Kimmel and colleagues stress that embryos can differ in developmental stage even within one clutch.

[12]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-I
    locator
    Introduction: developmental variability

Morphology is therefore more informative than assuming that all embryos of a given age are equivalent.

[12]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-I
    locator
    Introduction: rationale for staging

An embryo remaining inside its chorion need not be developmentally behind one that has already hatched.

[13]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-E
    locator
    Hatching Period: first paragraph

Separate pattern, parentage and habitat evidence

Patterson and Parichy used iridophore ablation to test effects on the developing arrangements of melanophores and xanthophores, rather than inferring interactions from colour alone.

[5]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-P
    locator
    Abstract; Results: iridophore ablation

Spence, Jordan and Smith assigned parentage genetically to offspring sampled after hatching.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Methods: Experiment; Parentage analysis

They explicitly distinguish this measure from fertilization success, because survival between fertilization and hatching can also affect which offspring are counted.

[6]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-R
    locator
    Discussion: fertilization-rate and embryo-survival caveat

The two Bangladesh field-study abstracts report habitat associations, food and seasonal growth, not one universal schedule for every population or laboratory line.

[3] [4]
Evidence for this statement

Editorial synthesis

Where to check this statement

  • evidence id
    A10-H
    locator
    Abstract
  • evidence id
    A10-D
    locator
    Abstract

From this article to your own question

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Evidence for this statement

EcoGenesis

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    Sources and versions

    Editorial draft · human review pending

    1. NCBI Taxonomy · 7955

      2026-09-06 · No source asset reused.

      Provenance and original
      Location in the original source
      Taxonomy ID; current name; rank; common names; homotypic synonyms; lineage, including Danionidae.
    2. FishBase · Danio-rerio

      2026-09-06 · Exact image licenses not verified; no asset copied.

      Provenance and original
      Location in the original source
      Classification; Environment; Distribution; Short description; Biology; Life cycle and mating behavior; image credits and page modification footer.
    3. Wiley / Journal of Fish Biology · 10.1111/j.1095-8649.2006.01206.x

      2026-09-06 · No full-text or figure reuse permission verified.

      Provenance and original
      Location in the original source
      Complete Abstract and bibliographic metadata; published 31 October 2006.
    4. Wiley / Journal of Fish Biology · 10.1111/j.1095-8649.2007.01492.x

      2026-09-06 · No source asset reused; full-text reuse rights not checked.

      Provenance and original
      Location in the original source
      Complete three-sentence Abstract; title, authors and date, first published 20 June 2007.
    5. PLOS Genetics · 10.1371/journal.pgen.1003561

      2026-09-06 · Creative Commons Attribution License stated; exact version not independently resolved.

      Provenance and original
      Location in the original source
      Abstract; Author Summary; Introduction opening on pigment classes and two life-cycle patterns; Results text on iridophore ablation and localized Csf1; copyright.
    6. Frontiers in Zoology / Springer Nature · 10.1186/1742-9994-3-5

      2026-09-06 · CC BY 2.0 as linked in Rights and permissions.

      Provenance and original
      Location in the original source
      Abstract; Background on zebrafish reproduction and courtship; Results; Discussion caveat on survival to hatching; Methods: Experiment and Parentage analysis; rights.
    7. NICHD / Brant Weinstein laboratory · https://www.nichd.nih.gov/research/atNICHD/Investigators/weinstein/zebrafish

      2026-09-06 · No individual image rights verified; no source image reused.

      Provenance and original
      Location in the original source
      Experimental accessibility; Optical transparency; content-owner and review-date footer.
    8. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Zygote Period; complete body: newly fertilized egg and 1-cell stage
    9. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Cleavage Period; complete description, not detailed stage subpage or figures
    10. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Segmentation Period; opening five paragraphs through somite differentiation
    11. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Temperature and Standard Developmental Time; main prose on 28.5 C, rate and synchronization
    12. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Introduction; opening three paragraphs on variability and morphological staging
    13. ZFIN / The Zebrafish Book · 10.1002/aja.1002030302

      2026-09-06 · Copyright 1995 Wiley-Liss; ZFIN says reprinted by permission, not a reuse license to EcoGenesis.

      Provenance and original
      Location in the original source
      Hatching Period; first six paragraphs through fin, mouth and jaw development
    Inspect structured data
    Content version
    5c75382de356e3e267e91da261fbc8cc5aaa38ad635da4580d8b3f61bf8b69d3
    Source version
    editorial-source-set.v1@9fa8ee222f3aa4c877cfea653e93e4a4dca373efef75c3ab9e7c5247f582cbd2
    Updated
    2026-09-19

    Where this organism has been observed

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    Observations and connections with other organisms

    Explore published sightings and reported interactions, such as feeding or pollination. Each record links to its source.

    Research about this organism

    01 · A place in the living world

    Classification

    Explore the tree of life
    1. No rankcellular organisms
    2. DomainEukaryota
    3. CladeOpisthokonta
    4. KingdomMetazoa
    5. CladeEumetazoa
    6. CladeBilateria
    7. CladeDeuterostomia
    8. PhylumChordata
    9. SubphylumCraniata
    10. CladeVertebrata
    11. CladeGnathostomata
    12. CladeTeleostomi
    13. CladeEuteleostomi
    14. SuperclassActinopterygii
    15. ClassActinopteri
    16. SubclassNeopterygii
    17. InfraclassTeleostei
    18. CladeOsteoglossocephalai
    19. CladeClupeocephala
    20. CohortOtomorpha
    21. SubcohortOstariophysi
    22. CladeOtophysi
    23. SuperorderCypriniphysae
    24. OrderCypriniformes
    25. SuborderCyprinoidei
    26. FamilyDanionidae
    27. SubfamilyDanioninae
    28. GenusDanio
    29. SpeciesDanio rerio

    02 · From organism to molecules

    Genes, genomes and proteins

    03 · Continue exploring

    Tools and connections

    04 · EcoGenesis

    What the available evidence supports

    Classification and name provenance; a source-attributed description.

    A catalogue name does not establish a genome, protein or measurement. Missing records do not mean a trait or gene is absent from the organism.

    Coverage updates as this page checks its sources.

    Sources and licences

    SourceIDLicenceDetails
    UniProt Taxonomy7955CC-BY-4.0Source record ↗
    UniProt Taxonomy7955CC-BY-4.0Description version ↗